Publication : t09/074

Abstract:
Folding of RNA is subject to a competition between entropy, relevant at high temperatures, and the random, or random looking, sequence, determining the low- temperature phase. It is known from numerical simulations that for random as well as biological sequences, high- and low-temperature phases are different, e.g. the exponent rho describing the pairing probability between two bases is rho = 3/2 in the high-temperature phase, and approximatively 4/3 in the low-temperature (glass) phase. Here, we present, for random sequences, a field theory of the phase transition separating high- and low-temperature phases. We establish the existence of the latter by showing that the underlying theory is renormalizable to all orders in perturbation theory. We test this result via an explicit 2-loop calculation, which yields rho approximatively 1.36 at the transition, as well as diverse other critical exponents, including the response to an applied external force (denaturation transition).

1742-5468_2009_10_P10019.pdf

publi.pdf